STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO40847.1Lipoprotein; Pfam:pfam04348 LppC putative lipoprotein. (628 aa)    
Predicted Functional Partners:
ALO40845.1
DnaA initiator-associating protein DiaA; Pfam:pfam13580 SIS domain.
  
    0.884
ALO40846.1
Pfam:pfam02021 Uncharacterized protein family UPF0102; Belongs to the UPF0102 family.
     
 0.872
ALO40844.1
Hypothetical protein; Pfam:pfam04972 BON domain.
  
    0.869
ALO43487.1
Murein polymerase; Pfam:pfam00912 Transglycosylase.
  
 
 
 0.814
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.791
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
   
 0.722
PP2015_59
Uroporphyrinogen-III synthase; Pfam:pfam04375 HemX.
  
     0.627
ALO42850.1
Pfam:pfam09839 Uncharacterized protein conserved in bacteria (DUF2066).
  
     0.579
ALO42580.1
FimV N-terminal domain protein.
  
     0.562
ALO43547.1
Hypothetical protein; Pfam:pfam13511 Domain of unknown function (DUF4124).
  
     0.558
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.