STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43911.1ABC-type antimicrobial peptide transport system, permease component; Pfam:pfam12704 MacB-like periplasmic core domain. (440 aa)    
Predicted Functional Partners:
ALO43910.1
ABC transporter-like protein; Pfam:pfam00005 ABC transporter.
 
   0.964
ALO43912.1
Hypothetical protein; Pfam:pfam02687 FtsX-like permease family.
 
     0.947
ALO43909.1
RND family efflux transporter MFP subunit; Pfam:pfam12700 HlyD family secretion protein.
 
    0.925
ALO44411.1
Pfam:pfam00005 ABC transporter.
 
   0.879
ALO44299.1
ABC-type antimicrobial peptide transport system, ATPase component; Pfam:pfam00005 ABC transporter.
 
   0.856
ALO44410.1
RND transporter MFP subunit; Pfam:pfam13437 HlyD family secretion protein.
 
    0.835
ALO44300.1
Multidrug resistance efflux pump; Pfam:pfam12700 HlyD family secretion protein.
 
    0.828
ALO44185.1
ABC transporter, ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
   0.806
ALO43982.1
Pfam:pfam00005 ABC transporter.
 
   0.790
ALO44413.1
ABC transporter permease; Pfam:pfam02687 FtsX-like permease family.
     0.787
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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