STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43981.1RND family efflux transporter MFP subunit; Pfam:pfam12700 HlyD family secretion protein. (418 aa)    
Predicted Functional Partners:
ALO43983.1
Hypothetical protein; Pfam:pfam12704 MacB-like periplasmic core domain.
 
  
 0.930
ALO43982.1
Pfam:pfam00005 ABC transporter.
 
   0.876
ALO43979.1
PAS/PAC sensor signal transduction histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.867
ALO43776.1
ABC transporter, permease protein; Pfam:pfam12704 MacB-like periplasmic core domain.
 
  
 0.840
ALO43777.1
ABC transporter permease; Pfam:pfam02687 FtsX-like permease family.
 
  
 0.840
ALO43718.1
Hypothetical protein; Pfam:pfam02687 FtsX-like permease family.
 
    0.815
ALO44186.1
Hypothetical protein; Pfam:pfam12704 MacB-like periplasmic core domain.
 
    0.791
ALO43781.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.757
ALO43778.1
Pfam:pfam00005 ABC transporter.
 
   0.748
ALO43980.1
ATPase AAA; Pfam:pfam00158 Sigma-54 interaction domain.
 
     0.742
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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