STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO40893.1Pfam:pfam05258 Protein of unknown function (DUF721). (161 aa)    
Predicted Functional Partners:
ALO41566.1
Pfam:pfam07445 Primosomal replication protein priB and priC.
  
     0.755
ALO41260.1
Putative N-ribosylNicotinamide CRP-like regulator; Pfam:pfam00027 Cyclic nucleotide-binding domain.
  
     0.748
ALO42120.1
Pfam:pfam10972 Protein of unknown function (DUF2803).
  
     0.658
ALO43479.1
DamX-like protein; Pfam:pfam13401 AAA domain.
  
     0.658
ALO43119.1
TPR repeat-containing transcriptional regulator; Pfam:pfam13371 Tetratricopeptide repeat.
  
     0.653
ALO41865.1
Hypothetical protein.
  
     0.649
ALO41976.1
Hypothetical protein.
  
     0.643
ALO43410.1
Putative integral membrane protein.
  
     0.632
ALO40781.1
Primosomal replication protein n.
  
     0.619
ALO42280.1
Cell division protein ZapC; Pfam:pfam07126 Protein of unknown function (DUF1379).
  
     0.610
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.