STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO44194.1Pfam:pfam03441 FAD binding domain of DNA photolyase. (464 aa)    
Predicted Functional Partners:
ALO44193.1
Pfam:pfam08349 Protein of unknown function (DUF1722).
  
  
 0.967
ALO44197.1
FAD-dependent oxidoreductase; Pfam:pfam13450 NAD(P)-binding Rossmann-like domain.
 
   
 0.935
ALO44192.1
Putative transcriptional activator; Pfam:pfam12973 ChrR Cupin-like domain.
     
 0.897
ALO44195.1
Transcriptional regulator; Pfam:pfam12680 SnoaL-like domain.
       0.896
ALO44196.1
Short-chain dehydrogenase/reductase SDR; Pfam:pfam00106 short chain dehydrogenase.
       0.896
ALO44191.1
RNA polymerase sigma factor; Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.893
ALO44198.1
Plasmid partition ParA protein; Pfam:pfam07103 Protein of unknown function (DUF1365).
 
     0.867
ALO44199.1
Cyclopropane-fatty-acyl-phospholipid synthase; Pfam:pfam02353 Mycolic acid cyclopropane synthetase.
 
   
 0.862
ALO44202.1
Pfam:pfam12915 Protein of unknown function (DUF3833).
 
  
 0.832
ALO44190.1
Hypothetical protein; Pfam:pfam02190 ATP-dependent protease La (LON) domain.
     
 0.804
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.