STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO44270.1Pfam:pfam03441 FAD binding domain of DNA photolyase. (487 aa)    
Predicted Functional Partners:
ALO44272.1
Pfam:pfam04244 Deoxyribodipyrimidine photo-lyase-related protein.
 
   
 0.944
ALO44269.1
Pfam:pfam03441 FAD binding domain of DNA photolyase.
 
    
0.926
ALO44271.1
Zinc finger protein; Pfam:pfam10013 Uncharacterized protein conserved in bacteria (DUF2256).
 
     0.866
ALO44193.1
Pfam:pfam08349 Protein of unknown function (DUF1722).
  
  
 0.745
ALO41961.1
Fumarylacetoacetate hydrolase; Pfam:pfam10985 Protein of unknown function (DUF2805).
 
     0.672
ALO44268.1
Hypothetical protein; Pfam:pfam07073 Modulator of Rho-dependent transcription termination (ROF).
       0.549
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.517
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.517
ALO44350.1
Amino acid adenylation domain/thioester reductase domain protein; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.493
ALO42424.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.466
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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