STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO44383.1Sensory box protein; Pfam:pfam00990 GGDEF domain. (409 aa)    
Predicted Functional Partners:
ALO42215.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 0.995
ALO40748.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
 
 0.959
ALO40734.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 0.924
ALO44037.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.922
ALO41016.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S); Pfam:pfam00563 EAL domain.
 
 
0.922
ALO44209.1
Putative two-component sensor; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.889
ALO42003.1
Sensor protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.885
ALO41939.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
 0.859
ALO43604.1
Pfam:pfam00990 GGDEF domain.
 
 
0.859
ALO41798.1
Diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
 
 0.837
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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