STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO44560.1Outer membrane receptor for ferrienterochelin and colicin; Pfam:pfam00593 TonB dependent receptor. (877 aa)    
Predicted Functional Partners:
ALO41516.1
Pfam:pfam00593 TonB dependent receptor.
  
  
 0.764
ALO44496.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.625
ALO44499.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.625
ALO42866.1
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
  
     0.607
ALO42013.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
  
 0.605
ALO42642.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
  
 0.603
ALO44598.1
Outer membrane protein with a TonB box; Pfam:pfam13620 Carboxypeptidase regulatory-like domain.
  
   
 0.576
ALO44105.1
Ligand-gated channel protein; Pfam:pfam00593 TonB dependent receptor.
  
    0.550
ALO42607.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.515
ALO44010.1
Pfam:pfam07690 Major Facilitator Superfamily.
  
    0.513
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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