STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO44687.1Hypothetical protein. (545 aa)    
Predicted Functional Partners:
ALO44688.1
Putative Fe transport outer membrane receptor protein; Pfam:pfam00593 TonB dependent receptor.
 
   
 0.966
ALO44686.1
Hypothetical protein.
 
    0.913
ALO44685.1
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
     0.882
ALO44682.1
Putative Tol protein; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
     0.877
ALO44681.1
TonB system biopolymer transport component Chromosome segregation ATPase; Pfam:pfam11932 Protein of unknown function (DUF3450).
 
 
   0.851
ALO43375.1
Hypothetical protein.
 
 
 0.836
ALO44683.1
Putative TonB system-dependent transport protein; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
     0.833
bamA
Outer membrane protein assembly factor YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.813
ALO44684.1
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
 
     0.804
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.804
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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