STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP2015_44Hydrolase; Pfam:pfam01804 Penicillin amidase. (765 aa)    
Predicted Functional Partners:
ALO44438.1
Beta-lactamase; Pfam:pfam13354 Beta-lactamase enzyme family.
     
  0.900
ALO41609.1
Non-ribosomal peptide synthase; Pfam:pfam00501 AMP-binding enzyme.
  
  
 0.661
PP2015_43
Pfam:pfam04337 Protein of unknown function, DUF480; Belongs to the UPF0502 family.
       0.579
ALO41322.1
Putative Fe transport outer membrane receptor protein; Pfam:pfam00593 TonB dependent receptor.
  
     0.404
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.