STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO40994.1Pfam:pfam14905 Outer membrane protein beta-barrel family. (707 aa)    
Predicted Functional Partners:
ALO44358.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
    0.709
ALO44253.1
Hypothetical protein; Pfam:pfam04397 LytTr DNA-binding domain.
  
     0.669
ALO41516.1
Pfam:pfam00593 TonB dependent receptor.
  
    0.580
ALO40638.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.571
ALO41572.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.553
ALO42013.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
    0.521
ALO40995.1
Pfam:pfam00072 Response regulator receiver domain.
       0.517
ALO40996.1
Pfam:pfam00512 His Kinase A (phospho-acceptor) domain.
       0.517
ALO44496.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.516
ALO41929.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.515
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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