STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41076.1Hypothetical protein; Pfam:pfam04748 Divergent polysaccharide deacetylase. (256 aa)    
Predicted Functional Partners:
ALO41078.1
Membrane-bound metallopeptidase; Pfam:pfam01551 Peptidase family M23.
 
   
 0.856
ALO41077.1
Carboxyl-terminal protease; Pfam:pfam03572 Peptidase family S41; Belongs to the peptidase S41A family.
       0.836
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.798
ALO41080.1
Rhodanese sulfur transferase; Pfam:pfam00581 Rhodanese-like domain.
       0.726
grxC
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.705
ALO41075.1
CBS domain-containing protein; Pfam:pfam00571 CBS domain.
       0.630
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.592
gpsA
Pfam:pfam07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.591
ALO41416.1
Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal; Belongs to the flagella basal body rod proteins family.
   
   0.480
ALO43518.1
Pfam:pfam01522 Polysaccharide deacetylase.
  
     0.413
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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