Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALO41094.1Pfam:pfam00482 Type II secretion system (T2SS), protein F. (411 aa)    
Predicted Functional Partners:
ALO41093.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.979
ALO41091.1
Pfam:pfam00437 Type II/IV secretion system protein.
 
 
 0.978
ALO43586.1
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.961
ALO43486.1
Pfam:pfam11104 Type IV pilus assembly protein PilM.
 
 
 
 0.872
ALO41095.1
Fimbrial protein; Pfam:pfam00114 Pilin (bacterial filament); Belongs to the N-Me-Phe pilin family.
 
   
 0.870
ALO43482.1
Type IV pilus biogenesis protein PilQ; Pfam:pfam00263 Bacterial type II and III secretion system protein.
 
 
 
 0.848
ALO42952.1
Twitching motility protein PilT; Pfam:pfam00437 Type II/IV secretion system protein.
 
  
 0.836
ALO42951.1
Twitching motility protein PilU; Pfam:pfam00437 Type II/IV secretion system protein.
 
   
 0.825
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.791
ALO43584.1
Pfam:pfam08334 Type II secretion system (T2SS), protein G.
 
  
 0.779
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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