STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41128.1Response regulator receiver protein; Pfam:pfam04397 LytTr DNA-binding domain. (530 aa)    
Predicted Functional Partners:
ALO43783.1
Response regulator receiver domain-containing protein; Pfam:pfam04397 LytTr DNA-binding domain.
  
     0.688
ALO43798.1
Putative transcriptional regulatory protein, AraC family; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.638
ALO40699.1
XRE family transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
  
     0.600
ALO41127.1
Beta-lactamase; Pfam:pfam00144 Beta-lactamase.
       0.572
ALO41168.1
Pfam:pfam01757 Acyltransferase family.
 
     0.554
ALO42167.1
Putative regulator of cell autolysis; Pfam:pfam06580 Histidine kinase.
 
 
 0.546
ALO43341.1
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.534
ALO43701.1
Hypothetical protein; Pfam:pfam06580 Histidine kinase.
 
 
 0.533
ALO41215.1
Pfam:pfam10067 Predicted membrane protein (DUF2306).
 
     0.527
ALO40675.1
Hypothetical protein; Pfam:pfam06580 Histidine kinase.
 
 
 0.525
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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