Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP2015_65Hypothetical protein. (107 aa)    
Predicted Functional Partners:
PP2015_64
Transcriptional regulator; Pfam:pfam13280 WYL domain.
       0.809
ALO40939.1
Exopolysaccharide biosynthesis protein, putative; Pfam:pfam02397 Bacterial sugar transferase.
  
  
 0.664
PP2015_66
Hypothetical protein.
       0.518
ALO42129.1
Intercellular adhesion protein A; Pfam:pfam02397 Bacterial sugar transferase.
  
  
 0.498
ALO41609.1
Non-ribosomal peptide synthase; Pfam:pfam00501 AMP-binding enzyme.
     
 0.482
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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