STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP2015_7Hypothetical protein. (146 aa)    
Predicted Functional Partners:
glyQ
Pfam:pfam02091 Glycyl-tRNA synthetase alpha subunit.
       0.772
glyS
Pfam:pfam02092 Glycyl-tRNA synthetase beta subunit.
       0.772
ALO43445.1
Hypothetical protein.
  
     0.735
ALO41038.1
Pfam:pfam11201 Protein of unknown function (DUF2982).
  
     0.735
ALO43583.1
General secretion pathway protein H.
  
     0.704
ALO43567.1
Hypothetical protein.
  
     0.689
ALO40900.1
Hypothetical protein.
  
     0.684
ALO42944.1
Hypothetical protein.
  
     0.681
ALO42381.1
Pfam:pfam11207 Protein of unknown function (DUF2989).
  
     0.673
ALO43539.1
Potassium channel protein; Pfam:pfam07885 Ion channel.
  
     0.667
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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