Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALO41255.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
ALO41254.1
Type II secretory pathway, component ExeA; Pfam:pfam13401 AAA domain.
 
   
 0.875
ALO41038.1
Pfam:pfam11201 Protein of unknown function (DUF2982).
  
     0.772
ALO42240.1
Pfam:pfam10981 Protein of unknown function (DUF2788).
  
     0.771
ALO43577.1
Pfam:pfam01203 Type II secretion system (T2SS), protein N.
  
     0.763
ALO42439.1
Membrane protein; Pfam:pfam09842 Predicted membrane protein (DUF2069).
  
     0.743
ALO42443.1
Pfam:pfam06804 NlpB/DapX lipoprotein.
  
     0.732
ALO42488.1
Sulfatase; Pfam:pfam11893 Domain of unknown function (DUF3413).
  
     0.731
ALO41764.1
Hypothetical protein.
  
     0.727
ALO42276.1
Pfam:pfam11949 Protein of unknown function (DUF3466).
  
     0.711
ALO42116.1
PilZ domain protein.
  
     0.710
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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