Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALO41266.1Diguanylate cyclase; Pfam:pfam00990 GGDEF domain. (334 aa)    
Predicted Functional Partners:
ALO42215.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 
 0.915
ALO40748.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
  
 0.847
ALO40734.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
   0.831
ALO43435.1
HAMP domain/GGDEF domain/EAL domain-containing protein; Pfam:pfam00563 EAL domain.
  
   0.799
ALO44555.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S); Pfam:pfam00563 EAL domain.
 
 
 0.799
ALO44122.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
  
    0.798
ALO43892.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
  
   0.794
ALO41939.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
  
    0.793
ALO41798.1
Diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
  
    0.791
ALO40927.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
  
   0.784
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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