Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALO41317.1Hypothetical protein; Pfam:pfam05643 Putative bacterial lipoprotein (DUF799). (222 aa)    
Predicted Functional Partners:
ALO41316.1
Lipoprotein.
 
    0.989
ALO41315.1
Membrane protein; Pfam:pfam03783 Curli production assembly/transport component CsgG.
 
    0.972
ALO41319.1
Hypothetical protein; Pfam:pfam13387 Domain of unknown function (DUF4105).
 
     0.522
ALO41314.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
       0.487
ALO41318.1
Hypothetical protein.
       0.476
ALO41404.1
Flagellar protein FlgT.
  
    0.459
ALO42723.1
Hypothetical protein.
  
     0.425
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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