Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALO41395.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (492 aa)    
Predicted Functional Partners:
ALO41396.1
Pfam:pfam00072 Response regulator receiver domain.
 
  0.997
ALO43868.1
Pfam:pfam00072 Response regulator receiver domain.
 
  0.980
ALO41849.1
Transcriptional regulatory protein RstA; Pfam:pfam00072 Response regulator receiver domain.
 
   0.751
ALO40864.1
Two component transcriptional regulator, winged helix family protein; Pfam:pfam00486 Transcriptional regulatory protein, C terminal.
 
   0.745
ALO41675.1
Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.
 
   0.739
ALO40995.1
Pfam:pfam00072 Response regulator receiver domain.
 
   0.728
ALO43877.1
Two component transcriptional regulator, winged helix family protein; Pfam:pfam00486 Transcriptional regulatory protein, C terminal.
 
   0.721
ALO44534.1
Pfam:pfam00072 Response regulator receiver domain.
 
   0.718
ALO41088.1
Two component transcriptional regulator, winged helix family protein; Pfam:pfam00072 Response regulator receiver domain.
 
   0.718
ALO42370.1
Response regulator in two-component regulatory system with PhoQ; Pfam:pfam00072 Response regulator receiver domain.
 
   0.709
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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