STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41433.1Hypothetical protein; Pfam:pfam02522 Aminoglycoside 3-N-acetyltransferase. (301 aa)    
Predicted Functional Partners:
ALO41435.1
Transketolase; Pfam:pfam00456 Transketolase, thiamine diphosphate binding domain.
       0.784
ALO41439.1
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA/FabZ; Pfam:pfam07977 FabA-like domain.
   
   0.782
ALO41434.1
1-deoxy-D-xylulose-5-phosphate synthase; Pfam:pfam02779 Transketolase, pyrimidine binding domain.
       0.773
ALO41436.1
Short-chain dehydrogenase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
       0.768
ALO41437.1
Hypothetical protein.
       0.767
ALO41438.1
Pfam:pfam00732 GMC oxidoreductase.
       0.767
ALO41442.1
AMP-dependent synthetase; Pfam:pfam00501 AMP-binding enzyme.
       0.710
ALO41445.1
Hypothetical protein; Pfam:pfam13302 Acetyltransferase (GNAT) domain.
       0.706
ALO41440.1
Pfam:pfam05893 Acyl-CoA reductase (LuxC).
       0.700
ALO41441.1
Pfam:pfam04443 Acyl-protein synthetase, LuxE.
       0.700
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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