STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN13435.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
KRN13434.1
Hypothetical protein.
     0.968
rexB
ATP-dependent helicase deoxyribonuclease subunit B; ATP-dependent DNA helicase.
  
 
 0.924
KRN13433.1
Phage recombination protein Bet.
 
  
 0.852
recD2
Exonuclease V subunit alpha; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.793
KRN13427.1
Hypothetical protein.
  
     0.722
KRN13455.1
Prophage Lp1 protein 39.
 
     0.652
KRN13331.1
Phage-related antirepressor.
 
     0.642
KRN13452.1
Hypothetical protein.
 
     0.637
KRN13330.1
DnaD domain-containing protein.
  
     0.590
KRN13468.1
Phage tape measure protein.
  
     0.561
Your Current Organism:
Lactobacillus fructivorans
NCBI taxonomy Id: 1614
Other names: ATCC 27394 [[Lactobacillus trichodes]], ATCC 8288, CCUG 32260, CIP 103042, DSM 20203, IFO 13954, KCTC 3543, L. fructivorans, LMG 9201, LMG:9201, Lactobacillus trichodes, NBRC 13954
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.