STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN13468.1Phage tape measure protein. (1549 aa)    
Predicted Functional Partners:
KRN13350.1
Hypothetical protein.
 
    0.873
KRN13340.1
HK97 family phage portal protein.
 
     0.838
KRN13338.1
Phage terminase.
 
     0.814
KRN13339.1
Phage terminase.
 
     0.811
KRN13342.1
HK97 family phage major capsid protein.
 
    0.811
KRN13452.1
Hypothetical protein.
 
    0.811
KRN13337.1
Phage terminase, small subunit, P27 family protein.
 
     0.803
KRN13336.1
HNH endonuclease.
 
     0.786
KRN13469.1
Hypothetical protein.
       0.773
KRN13455.1
Prophage Lp1 protein 39.
 
    0.772
Your Current Organism:
Lactobacillus fructivorans
NCBI taxonomy Id: 1614
Other names: ATCC 27394 [[Lactobacillus trichodes]], ATCC 8288, CCUG 32260, CIP 103042, DSM 20203, IFO 13954, KCTC 3543, L. fructivorans, LMG 9201, LMG:9201, Lactobacillus trichodes, NBRC 13954
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.