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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN13613.1ABC-2 type transporter. (272 aa)    
Predicted Functional Partners:
tagH
O-antigen export system ATP-binding protein RfbB family protein; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system.
 
 0.999
KRN13614.1
CDP-glycerol poly(glycerophosphate) glycerophosphotransferase.
 
  
 0.959
KRN13612.1
Glycosyl glycerophosphate transferase.
 
  
 0.957
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.795
KRN12239.1
CDP-glycerol glycerophosphotransferase.
 
  
 0.793
KRN12945.1
UDP-galactopyranose mutase.
  
  
 0.638
KRN13316.1
Hypothetical protein.
  
  
 0.637
KRN13376.1
Phosphonate-transporting ATPase.
    
 0.636
KRN12754.1
Ribonucleotide-diphosphate reductase subunit beta.
   
    0.535
KRN13195.1
Hypothetical protein.
  
     0.518
Your Current Organism:
Lactobacillus fructivorans
NCBI taxonomy Id: 1614
Other names: ATCC 27394 [[Lactobacillus trichodes]], ATCC 8288, CCUG 32260, CIP 103042, DSM 20203, IFO 13954, KCTC 3543, L. fructivorans, LMG 9201, LMG:9201, Lactobacillus trichodes, NBRC 13954
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