STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN12628.1Helix-turn-helix domain-containing protein. (301 aa)    
Predicted Functional Partners:
KRN12629.1
3-methyladenine DNA glycosylase I.
       0.773
KRN12630.1
Hypothetical protein.
       0.773
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.709
KRN13694.1
Type I site-specific restriction-modification system, R (restriction) subunit.
  
  
  0.644
KRN12081.1
Cell surface protein precursor.
  
     0.610
KRN12762.1
RNA polymerase sigma factor, sigma-70 family protein.
  
     0.601
KRN13755.1
Adaptor protein.
  
    0.544
ddl
D-alanyl-alanine synthetase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.499
KRN12072.1
Hypothetical protein.
  
     0.499
KRN12356.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Lactobacillus fructivorans
NCBI taxonomy Id: 1614
Other names: ATCC 27394 [[Lactobacillus trichodes]], ATCC 8288, CCUG 32260, CIP 103042, DSM 20203, IFO 13954, KCTC 3543, L. fructivorans, LMG 9201, LMG:9201, Lactobacillus trichodes, NBRC 13954
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.