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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN12726.1Helicase domain-containing protein. (446 aa)    
Predicted Functional Partners:
KRN12725.1
ComF operon protein 3.
  
  
 0.955
KRN13701.1
Competence protein ComEA helix-hairpin-helix repeat-containing protein.
   
  
 0.865
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.722
KRN12579.1
Type II secretion system protein E.
   
  
 0.707
KRN12727.1
Hypothetical protein.
       0.702
KRN12578.1
Hypothetical protein.
   
  
 0.645
KRN12577.1
Competence protein ComGC.
   
  
 0.641
KRN13570.1
DNA processing protein.
  
  
 0.631
KRN12574.1
Hypothetical protein.
   
  
 0.593
KRN12576.1
Hypothetical protein.
   
  
 0.593
Your Current Organism:
Lactobacillus fructivorans
NCBI taxonomy Id: 1614
Other names: ATCC 27394 [[Lactobacillus trichodes]], ATCC 8288, CCUG 32260, CIP 103042, DSM 20203, IFO 13954, KCTC 3543, L. fructivorans, LMG 9201, LMG:9201, Lactobacillus trichodes, NBRC 13954
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.