STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN12085.1Cell surface hydrolase, membrane-bound. (268 aa)    
Predicted Functional Partners:
KRN12113.1
Alpha beta hydrolase superfamily protein.
  
     0.774
KRN12084.1
Hypothetical protein.
 
     0.658
KRN12062.1
Transcriptional regulator.
  
     0.638
KRN12624.1
Hypothetical protein.
  
     0.632
KRN12081.1
Cell surface protein precursor.
 
     0.522
cshA
DEAD DEAH box helicase domain-containing protein; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
   
  
 0.509
KRN12334.1
Cell surface protein.
  
     0.488
KRN13377.1
ABC transporter EcsB.
  
     0.473
KRN12145.1
Diaminopimelate epimerase.
  
     0.468
KRN13110.1
Hypothetical protein.
  
     0.446
Your Current Organism:
Lactobacillus fructivorans
NCBI taxonomy Id: 1614
Other names: ATCC 27394 [[Lactobacillus trichodes]], ATCC 8288, CCUG 32260, CIP 103042, DSM 20203, IFO 13954, KCTC 3543, L. fructivorans, LMG 9201, LMG:9201, Lactobacillus trichodes, NBRC 13954
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