STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_17657Hypothetical protein; COG3505 Type IV secretory pathway, VirD4 components. (529 aa)    
Predicted Functional Partners:
ED21_23423
Type IV secretion system protein B10, putative; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.815
ED21_22418
Conjugation TrbI-like protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.801
ED21_20444
HNH endonuclease family protein; COG1403 Restriction endonuclease.
   
 
 0.787
ED21_30219
Hypothetical protein; COG1403 Restriction endonuclease.
   
 
 0.787
ED21_17662
Hypothetical protein.
       0.783
ED21_23676
Type IV secretion system protein B10, putative; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.783
ED21_17642
COG4227 Antirestriction protein.
 
    0.781
ED21_23671
Type IV secretion system protein B9, putative; COG3504 Type IV secretory pathway, VirB9 components.
 
   
 0.727
ED21_17667
Hypothetical protein.
       0.668
ED21_23403
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.657
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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