Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ED21_17577 | ED21_18407 | ED21_17577 | ED21_18407 | COG1360 Flagellar motor protein. | COG0177 Predicted EndoIII-related endonuclease. | 0.550 |
ED21_17577 | ED21_18412 | ED21_17577 | ED21_18412 | COG1360 Flagellar motor protein. | COG0177 Predicted EndoIII-related endonuclease. | 0.550 |
ED21_17577 | ED21_25748 | ED21_17577 | ED21_25748 | COG1360 Flagellar motor protein. | Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.756 |
ED21_17577 | nth | ED21_17577 | ED21_22803 | COG1360 Flagellar motor protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.550 |
ED21_18047 | ED21_18407 | ED21_18047 | ED21_18407 | COG0708 Exonuclease III. | COG0177 Predicted EndoIII-related endonuclease. | 0.776 |
ED21_18047 | ED21_18412 | ED21_18047 | ED21_18412 | COG0708 Exonuclease III. | COG0177 Predicted EndoIII-related endonuclease. | 0.775 |
ED21_18047 | ED21_19392 | ED21_18047 | ED21_19392 | COG0708 Exonuclease III. | Hypothetical protein; COG0708 Exonuclease III. | 0.920 |
ED21_18047 | ED21_30154 | ED21_18047 | ED21_30154 | COG0708 Exonuclease III. | Probable ada regulatory of adaptative response protein; COG2169 Adenosine deaminase. | 0.530 |
ED21_18047 | nth | ED21_18047 | ED21_22803 | COG0708 Exonuclease III. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.776 |
ED21_18047 | polA | ED21_18047 | ED21_20654 | COG0708 Exonuclease III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.905 |
ED21_18407 | ED21_17577 | ED21_18407 | ED21_17577 | COG0177 Predicted EndoIII-related endonuclease. | COG1360 Flagellar motor protein. | 0.550 |
ED21_18407 | ED21_18047 | ED21_18407 | ED21_18047 | COG0177 Predicted EndoIII-related endonuclease. | COG0708 Exonuclease III. | 0.776 |
ED21_18407 | ED21_18412 | ED21_18407 | ED21_18412 | COG0177 Predicted EndoIII-related endonuclease. | COG0177 Predicted EndoIII-related endonuclease. | 0.987 |
ED21_18407 | ED21_18417 | ED21_18407 | ED21_18417 | COG0177 Predicted EndoIII-related endonuclease. | CHRD. | 0.737 |
ED21_18407 | ED21_19392 | ED21_18407 | ED21_19392 | COG0177 Predicted EndoIII-related endonuclease. | Hypothetical protein; COG0708 Exonuclease III. | 0.911 |
ED21_18407 | ED21_25748 | ED21_18407 | ED21_25748 | COG0177 Predicted EndoIII-related endonuclease. | Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.531 |
ED21_18407 | ED21_30154 | ED21_18407 | ED21_30154 | COG0177 Predicted EndoIII-related endonuclease. | Probable ada regulatory of adaptative response protein; COG2169 Adenosine deaminase. | 0.445 |
ED21_18407 | guaA | ED21_18407 | ED21_18422 | COG0177 Predicted EndoIII-related endonuclease. | Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP. | 0.505 |
ED21_18407 | nth | ED21_18407 | ED21_22803 | COG0177 Predicted EndoIII-related endonuclease. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.828 |
ED21_18407 | polA | ED21_18407 | ED21_20654 | COG0177 Predicted EndoIII-related endonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.642 |
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