STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_18842Di-tripeptide ABC transporter-like protein; COG3104 Dipeptide/tripeptide permease. (613 aa)    
Predicted Functional Partners:
ED21_18837
Transcriptional regulator, GntR family protein; COG1725 Predicted transcriptional regulators.
       0.600
ED21_18847
COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
       0.595
ED21_18852
COG4094 Predicted membrane protein.
       0.559
ED21_28618
Zinc-dependent metallopeptidase.
 
   
 0.491
ED21_17947
Probable zinc metalloproteinase; COG3590 Predicted metalloendopeptidase.
  
  
 0.465
ED21_18832
Integration host factor beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.437
ED21_31094
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.434
ED21_28648
Dipeptidyl aminopeptidase; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
    0.422
ED21_23318
COG0531 Amino acid transporters.
  
 
 0.418
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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