Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ED21_20249Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (136 aa)    
Predicted Functional Partners:
ED21_20259
Hypothetical protein; COG1155 Archaeal/vacuolar-type H+-ATPase subunit A.
 
     0.964
ED21_20244
Hypothetical protein.
 
     0.948
ED21_20254
Hypothetical protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
 
     0.947
ED21_20264
Tail tape meausure protein, putative; COG5281 Phage-related minor tail protein.
 
     0.908
ED21_20279
COG5437 Predicted secreted protein.
 
     0.880
ED21_20239
Hypothetical protein.
 
   0.863
ED21_20309
Hypothetical protein.
 
     0.835
ED21_18512
COG2177 Cell division protein.
 
 
 
 0.779
ED21_19062
Hypothetical protein.
  
     0.744
ED21_19287
Hypothetical protein.
  
     0.683
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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