STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_21424Hypothetical protein; COG1407 Predicted ICC-like phosphoesterases. (234 aa)    
Predicted Functional Partners:
ED21_19997
ATP-dependent RNA helicase, DEAD/DEAH box family protein; COG1201 Lhr-like helicases.
 
    0.822
ED21_19597
COG1793 ATP-dependent DNA ligase.
 
   
 0.818
ED21_19602
Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
 
     0.807
ED21_21429
COG0408 Coproporphyrinogen III oxidase.
 
     0.679
ED21_19047
Hypothetical protein.
  
     0.564
infC
COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.
       0.528
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.