STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_23836Carotene hydroxylase. (172 aa)    
Predicted Functional Partners:
ED21_22009
Hypothetical protein.
 
  
 0.978
ED21_21989
COG1562 Phytoene/squalene synthetase.
 
 0.815
ED21_23831
Hypothetical protein; COG0824 Predicted thioesterase.
 
     0.752
ED21_23113
Hypothetical protein; COG3239 Fatty acid desaturase.
  
 
 0.735
ED21_22004
COG1233 Phytoene dehydrogenase and related proteins.
 
   
 0.713
ED21_27718
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
  
 0.684
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.562
ED21_23601
Tryptophan halogenase, putative.
   
 0.521
ED21_30549
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 0.521
ED21_23821
Isopropylmalate isomerase large subunit.
       0.508
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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