STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_24791COG1092 Predicted SAM-dependent methyltransferases; Belongs to the methyltransferase superfamily. (295 aa)    
Predicted Functional Partners:
ED21_24786
COG0498 Threonine synthase.
       0.820
ED21_24801
Hypothetical protein.
       0.806
ED21_24806
Hypothetical protein; COG1977 Molybdopterin converting factor, small subunit.
  
    0.805
ED21_24796
Hypothetical protein; COG1539 Dihydroneopterin aldolase.
       0.778
ED21_24136
COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
 
   0.750
ED21_24781
Hypothetical protein.
       0.723
ED21_24811
COG0314 Molybdopterin converting factor, large subunit.
       0.687
ED21_24776
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
       0.548
ED21_21859
COG0404 Glycine cleavage system T protein (aminomethyltransferase).
    
  0.499
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
    
  0.487
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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