STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_25277Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis. (342 aa)    
Predicted Functional Partners:
ED21_25267
Methylase involved in ubiquinone/menaquinone biosynthesis-like protein; COG0500 SAM-dependent methyltransferases.
 
 
 0.881
ED21_25272
Hypothetical protein.
  
 
 0.859
ED21_25262
COG0438 Glycosyltransferase.
 
 
  0.793
ED21_25903
Sucrose-phosphate phosphatase; COG0438 Glycosyltransferase.
 
 0.663
ED21_22983
Putative GDP-mannose pyrophosphorylase; COG0836 Mannose-1-phosphate guanylyltransferase.
  
 
 0.554
ED21_25257
Hypothetical protein.
       0.530
ED21_25282
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.488
ED21_25287
Hypothetical protein.
       0.488
ED21_25292
Hypothetical protein; COG2303 Choline dehydrogenase and related flavoproteins.
       0.488
ED21_29616
Putative dolichol monophosphate mannose synthase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 
0.482
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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