STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_27548COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (149 aa)    
Predicted Functional Partners:
ED21_31289
Hypothetical protein.
 
     0.807
ED21_31294
Membrane protein; COG0730 Predicted permeases.
 
     0.781
ED21_19182
COG2981 Uncharacterized protein involved in cysteine biosynthesis.
  
     0.733
ED21_19692
COG1495 Disulfide bond formation protein DsbB.
  
     0.704
ED21_29949
COG0539 Ribosomal protein S1.
  
     0.648
ED21_22668
Hypothetical protein; Belongs to the UPF0262 family.
  
     0.626
ED21_27553
Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.625
ED21_27563
Cytosolic long-chain acyl-CoA thioester hydrolase family protein; COG1607 Acyl-CoA hydrolase.
       0.605
ED21_18647
Hypothetical protein; COG1049 Aconitase B.
  
     0.588
ED21_18927
Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.543
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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