STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_29391ErfK/YbiS/YcfS/YnhG; COG3409 Putative peptidoglycan-binding domain-containing protein. (281 aa)    
Predicted Functional Partners:
pcm
Hypothetical fusion protein; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
       0.773
fumC-2
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.689
ED21_27588
Serine-type D-Ala-D-Ala carboxypeptidase; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.507
ED21_29401
Succinate dehydrogenase cytochrome b subunit family protein; COG4244 Predicted membrane protein.
 
     0.501
ED21_27473
Hypothetical protein.
  
     0.459
ED21_31659
Hypothetical protein.
  
    0.443
ED21_27178
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.417
ED21_26548
Hypothetical protein; COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
  
 0.416
ED21_31339
N-acetylmuramoyl-L-alanine amidase; COG3023 Negative regulator of beta-lactamase expression.
     
 0.414
ED21_20669
AtsE; COG5622 Protein required for attachment to host cells.
  
     0.412
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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