STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_30904COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold. (549 aa)    
Predicted Functional Partners:
ED21_30899
COG1171 Threonine dehydratase.
       0.681
ED21_29536
Metal dependent amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.649
ED21_21884
COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; Belongs to the HIBADH-related family.
    
  0.621
ED21_22034
Xaa-Pro dipeptidase, putative; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.582
ED21_22118
Hypothetical protein; COG2319 FOG: WD40 repeat.
  
     0.476
bpt
Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
       0.468
ED21_24571
Conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily protein; COG2866 Predicted carboxypeptidase.
 
     0.437
ED21_30889
COG4775 Outer membrane protein/protective antigen OMA87.
       0.422
ED21_30884
COG2911 Uncharacterized protein conserved in bacteria.
       0.421
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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