Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ED21_32074COG2124 Cytochrome P450. (420 aa)    
Predicted Functional Partners:
ED21_32079
Ferredoxin, 2Fe-2S; COG0633 Ferredoxin.
 
  0.910
ED21_32034
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
  0.849
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.745
ED21_25582
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
    
 0.727
ED21_20789
Metallophosphoesterase; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
    
  0.726
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.724
ED21_20264
Tail tape meausure protein, putative; COG5281 Phage-related minor tail protein.
    
  0.719
ED21_31764
Hypothetical protein.
  
  0.709
ED21_21294
Adenylate cyclase cya3 (Sinorhizobium meliloti); COG0457 FOG: TPR repeat.
   
 0.707
ED21_32024
Hydrolase, putative; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
 
  0.706
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
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