STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ED21_32220Hypothetical protein; COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit. (258 aa)    
Predicted Functional Partners:
ED21_17687
Putative methylase/helicase.
 
     0.976
ED21_17642
COG4227 Antirestriction protein.
 
     0.892
ED21_17632
Hypothetical protein.
  
     0.761
ED21_22413
Putative DNA-binding protein; COG1475 Predicted transcriptional regulators.
  
     0.657
ED21_23676
Type IV secretion system protein B10, putative; COG2948 Type IV secretory pathway, VirB10 components.
  
     0.634
ED21_23423
Type IV secretion system protein B10, putative; COG2948 Type IV secretory pathway, VirB10 components.
  
     0.628
ED21_22418
Conjugation TrbI-like protein; COG2948 Type IV secretory pathway, VirB10 components.
  
     0.616
ED21_17682
Hypothetical protein; COG1475 Predicted transcriptional regulators.
  
     0.549
ED21_23671
Type IV secretion system protein B9, putative; COG3504 Type IV secretory pathway, VirB9 components.
  
     0.547
ED21_22438
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.532
Your Current Organism:
Erythrobacter sp. SD21
NCBI taxonomy Id: 161528
Other names: E. sp. SD-21, Erythrobacter sp. SD-21
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.