STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (350 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.892
KXK22801.1
seryl-tRNA synthetase; Overlaps another CDS with the same product name.
   
 
 0.829
KXK22802.1
seryl-tRNA synthetase; Overlaps another CDS with the same product name.
   
 
 0.829
rpmD
Ribosomal protein L30.
   
    0.808
ilvC
Ketol-acid reductoisomerase.
       0.773
pgk_1
Phosphoglycerate kinase.
  
 
  0.744
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.586
KXK23624.1
DNA polymerase IV.
    
   0.562
KXK13659.1
Hypothetical protein.
       0.557
KXK17400.1
Permease.
   
    0.527
Your Current Organism:
Chloroflexi bacterium OLB15
NCBI taxonomy Id: 1617416
Other names: C. bacterium OLB15
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