STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK05420.1MerR family transcriptional regulator. (127 aa)    
Predicted Functional Partners:
KXK04158.1
Diguanylate cyclase/phosphodiesterase; Response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
   
 0.639
KXK07431.1
Diguanylate cyclase/phosphodiesterase; Response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
    
 0.627
KXK07064.1
Diguanylate cyclase/phosphodiesterase.
    
 0.627
KXK04275.1
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
    
 0.627
KXK05418.1
Zn finger domain-containing DnaJ-class molecular chaperone.
  
   0.623
sigA
Sigma 38, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
 
 0.608
KXK03767.1
Diguanylate cyclase domain-containing protein.
    
 0.596
KXK05419.1
S23 ribosomal protein.
       0.578
KXK01203.1
GAF sensor-containing diguanylate cyclase.
   
 0.556
KXK01204.1
Diguanylate cyclase and metal dependent phosphohydrolase.
   
 0.556
Your Current Organism:
Acidobacteria bacterium OLB17
NCBI taxonomy Id: 1617423
Other names: A. bacterium OLB17
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