STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjZTVP38/TMEM64 family inner membrane protein YdjZ. (192 aa)    
Predicted Functional Partners:
KXK26013.1
Hypothetical protein.
    
  0.726
ubiE
Demethylmenaquinone methyltransferase.
    
  0.697
cypM
Cypemycin methyltransferase.
    
  0.697
serS_1
Serine--tRNA ligase.
    
  0.642
serS_2
Serine--tRNA ligase.
    
  0.642
trxB
Thioredoxin reductase.
    
  0.607
rnjA
Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.560
ssb_1
Single-stranded DNA-binding protein.
       0.496
Your Current Organism:
candidate division WS6 bacterium OLB20
NCBI taxonomy Id: 1617426
Other names: c. division WS6 bacterium OLB20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.