STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF_1Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (330 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein OppC.
 0.990
gsiD_2
Glutathione transport system permease protein GsiD.
 0.990
gsiD_3
Glutathione transport system permease protein GsiD.
 0.988
gsiD_1
Glutathione transport system permease protein GsiD.
 0.985
gsiC_2
Glutathione transport system permease protein GsiC.
 
 0.934
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
   
 
0.919
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 
0.910
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 
0.909
gsiC_3
Glutathione transport system permease protein GsiC.
 
 0.893
hbpA
Heme-binding protein A precursor.
 
 0.890
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.