STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK39393.1GH3 auxin-responsive promoter. (558 aa)    
Predicted Functional Partners:
KXK39392.1
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.826
ykfB
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.788
KXK31678.1
Tyrosine kinase.
    
  0.637
ychF
Ribosome-binding ATPase YchF.
       0.585
wbbL_1
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
    
  0.582
epsH_4
Putative glycosyltransferase EpsH.
    
  0.582
KXK31698.1
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.570
KXK31714.1
Iron-sulfur-binding protein.
     
 0.570
wcaJ_1
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
    
  0.564
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
    
  0.564
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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