STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK38643.1Putative oxidoreductase. (375 aa)    
Predicted Functional Partners:
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.773
rsmA_1
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.773
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
 
  0.687
KXK37844.1
Hypothetical protein.
  
     0.671
yhdN_3
General stress protein 69.
  
     0.620
KXK38642.1
FG-GAP repeat protein.
       0.568
korA
2-oxoglutarate oxidoreductase subunit KorA.
   
 
  0.565
yhdN_1
General stress protein 69.
  
     0.540
pyrK_1
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit.
  
  0.525
pyrK_2
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit.
  
  0.525
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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