STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknD_1Serine/threonine-protein kinase PknD. (659 aa)    
Predicted Functional Partners:
exbD
Biopolymer transport protein ExbD.
  
 0.992
KXK37398.1
Biopolymer transport protein ExbD.
  
 0.992
exbB_1
Biopolymer transport protein ExbB.
  
 0.989
exbB_2
Biopolymer transport protein ExbB.
  
 0.989
KXK40580.1
Hypothetical protein.
   
 
 0.946
KXK40113.1
Hypothetical protein.
   
 
 0.933
KXK38653.1
Hypothetical protein.
   
 
 0.933
KXK38536.1
Hypothetical protein.
   
 
 0.933
tolB_2
Protein TolB.
   
 
 0.933
KXK28547.1
WD40-like Beta Propeller Repeat protein.
   
 
 0.933
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.