STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_1Putative ABC transporter ATP-binding protein YxlF. (247 aa)    
Predicted Functional Partners:
ybhR
Inner membrane transport permease YbhR.
 
 0.969
cbiO
Cobalt import ATP-binding protein CbiO.
 
  
 
0.940
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
  
 
0.926
KXK37394.1
Transglutaminase-like superfamily protein.
     0.823
KXK33585.1
Putative multidrug export ATP-binding/permease protein.
  
 
  0.789
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.778
KXK37393.1
Hypothetical protein.
       0.773
yheI
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
  
 
  0.766
KXK31860.1
Putative multidrug export ATP-binding/permease protein.
  
 
 
0.753
KXK34771.1
Putative multidrug export ATP-binding/permease protein.
  
 
 
0.752
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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