STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnC_2Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase. (228 aa)    
Predicted Functional Partners:
KXK32553.1
Undecaprenyl-phosphate mannosyltransferase.
  
     0.654
KXK36808.1
Hypothetical protein.
       0.651
KXK29269.1
Long-chain-fatty-acid--AMP ligase FadD32.
  
 0.647
pgaC
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
 
  0.644
epsH_2
Putative glycosyltransferase EpsH.
 
 
 0.600
epsH_4
Putative glycosyltransferase EpsH.
 
 
 0.558
KXK36810.1
Hypothetical protein.
       0.499
KXK36811.1
Hypothetical protein.
       0.499
ppsB
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsB.
  
 0.488
arnT
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
 
  0.474
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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