KXK35864.1 protein (Omnitrophica bacterium OLB16)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXK35864.1

Flagellar MS-ring protein. (211 aa)

Predicted Functional Partners:

fliG

0.997

fliN

0.990

flgC

0.986

flgB

0.986

fliM

0.954

fliQ

0.946

fliP

0.946

flgE

0.946

flgH

0.946

flgI

0.945

Your Current Organism:

Omnitrophica bacterium OLB16

NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXK35864.1	flgB	UZ16_OP3001001713	UZ16_OP3001001716	Flagellar MS-ring protein.	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.986
KXK35864.1	flgC	UZ16_OP3001001713	UZ16_OP3001001715	Flagellar MS-ring protein.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.986
KXK35864.1	flgE	UZ16_OP3001001713	UZ16_OP3001002071	Flagellar MS-ring protein.	Flagellar hook protein FlgE.	0.946
KXK35864.1	flgH	UZ16_OP3001001713	UZ16_OP3001002092	Flagellar MS-ring protein.	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.946
KXK35864.1	flgI	UZ16_OP3001001713	UZ16_OP3001002091	Flagellar MS-ring protein.	Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.945
KXK35864.1	fliG	UZ16_OP3001001713	UZ16_OP3001001711	Flagellar MS-ring protein.	Flagellar motor switch protein FliG.	0.997
KXK35864.1	fliM	UZ16_OP3001001713	UZ16_OP3001001633	Flagellar MS-ring protein.	Flagellar motor switch protein FliM.	0.954
KXK35864.1	fliN	UZ16_OP3001001713	UZ16_OP3001001632	Flagellar MS-ring protein.	Flagellar motor switch protein FliN.	0.990
KXK35864.1	fliP	UZ16_OP3001001713	UZ16_OP3001001630	Flagellar MS-ring protein.	Flagellar biosynthetic protein FliP precursor.	0.946
KXK35864.1	fliQ	UZ16_OP3001001713	UZ16_OP3001001629	Flagellar MS-ring protein.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.946
flgB	KXK35864.1	UZ16_OP3001001716	UZ16_OP3001001713	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar MS-ring protein.	0.986
flgB	flgC	UZ16_OP3001001716	UZ16_OP3001001715	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.999
flgB	flgE	UZ16_OP3001001716	UZ16_OP3001002071	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar hook protein FlgE.	0.994
flgB	flgH	UZ16_OP3001001716	UZ16_OP3001002092	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.988
flgB	flgI	UZ16_OP3001001716	UZ16_OP3001002091	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.988
flgB	fliG	UZ16_OP3001001716	UZ16_OP3001001711	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar motor switch protein FliG.	0.974
flgB	fliM	UZ16_OP3001001716	UZ16_OP3001001633	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar motor switch protein FliM.	0.967
flgB	fliN	UZ16_OP3001001716	UZ16_OP3001001632	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar motor switch protein FliN.	0.991
flgB	fliP	UZ16_OP3001001716	UZ16_OP3001001630	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar biosynthetic protein FliP precursor.	0.993
flgB	fliQ	UZ16_OP3001001716	UZ16_OP3001001629	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.990